All functions |
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Specify Input/Output Directories For Project |
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Functions for converting longitude and latitude to UTM zones and coordinates. |
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Get Dimensions of List Elements |
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Identify and Unpack eBird Observations Files |
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Convert long, lat Locations to UTM coordinates and zones Returns a data frame containing the UTM values, the zone and the hemisphere associated with long lat coordinates. |
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Cast Data to Array or Matrix for Use in JAGS |
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Manipulate the BBS route shapefiles |
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Bundle Data for Use in JAGS |
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Munge eBird for Use Case |
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Create an SF object for eBird Observations |
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Function for Generating Basis Functions |
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Create a List of Repeated Initial Values for each Chain |
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Make 2-D array (Matrix for JAGS) |
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Make List of Data and Constants for Nimble/JAGS |
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Create a Spatial Sampling Grid as Raster using WorldClim |
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Create a Spatial Sampling Grid |
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Munge Dates and Times of the eBird and BBS Datasets |
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Munge eBird Data |
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Create and Write or Load In the Filtered eBird Data |
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Partition the eBird Sampling Events Data File by States/Provinces |
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Pluck Multiple Elements from List Object |
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Run Nimble Model in Parallel Function will run a Nimble model for 'nc' indepdendent chains |
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Write Model Runtimes to Working Directory |
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Set Specifications for MCMC |
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Auto generate a subdirectory name based on project parameters |
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Center and/or Z-Score Transform a Vector or Array |
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Create a Zero-filled Data Object for eBird Observations |