Set Specifications for MCMC

Set Specifications for MCMC

set_mcmc_specs(
  na = 1000,
  nb = 5000,
  nc = 3,
  ni = 20000,
  nt = 10,
  in.parallel = FALSE,
  ncores = parallel::detectCores() - 1,
  dev.mode = 2
)

Arguments

na

number of adaptation iterations

nb

number of burn-in iterations per chain

nc

number of chains

ni

number of iterations per chain

nt

thinning rate (every nth iteration removed)

in.parallel

logical if TRUE will set number chains ('nc') value to 1

ncores

number of cores to run model in parallel

dev.mode

integer 1:3. 1=large-ish run; 2=moderate run; 3=quick, short run.